Django3 Omics Pipelines
A web-server to setup processing pipelines proteomics .RAW files.
1) Create a project 2) Create a pipeline by providing a fasta file and a MaxQuant parameter template (mqpar.xml) 3) Submit .RAW files to the pipeline 4) Download results 5) Explore data with the integrated dashboard
The server organizes files into projects. Therefore, at least one project hast to be created. Then a pipeline can be created. Herefore, a MaxQuant parameter file (mqpar.xml) and a fasta file have to be provided.
MaxQuant Parameter file (
mqpar.xml has to be created as a blueprint for the pipeline jobs for example using
the MaxQuant GUI. The pipeline is currently restricted to process a single .RAW per job,
mqpar.xml file has to be created with a single .RAW file.
The MaxQuant version supported is
MaxQuant 1.6.10 due to limited compatability
.NET versions used by MaxQuant and current
mono is a
.NET that runs on Linux platforms.ll