/api/projects

Returns a json object with information about all projects on the server.

Example:

curl -X POST --data project=lsarp  https://proteomics.resistancedb.org/api/projects

>>>
[{"pk": 1, "name": "LSARP", "description": "This project is very large and applied", "slug": "lsarp"}, 
 {"pk": 2, "name": "Saliva project", "description": "The project is about...", "slug": "saliva"}, 
 {"pk": 3, "name": "SARS-CoV-2 Detection", "description": "Detection of SARS-CoV-2 Proteins from Patient Samples.", "slug": "sars-cov-2-detection"}]

/api/upload/raw

Submits a raw file to an existing pipeline. Raw files can be submitted to an existing pipeline using the API. To submit a raw file the UUID of the user and the target pipeline are required which can be found in the admin detail view of the respective user and pipeline:

Example:

curl -v -i -F orig_file="@</your/file.raw>" -F pipeline=3388219a-f9cd-4749-9f5e-d9da5bca9286 -F user=gd5d56ac-1rb9-4181-8fbd-b6579ccb8fc1 https://proteomics.resistancedb.org/api/upload/raw

Alternatively, the python script lrg_upload_raw_file_to_qc_pipeline.py that is part of the lrg_omics packages can be used:

python lrg_upload_raw_file_to_qc_pipeline.py --raw your/file.raw --host https://example.com --user 3388219a-f9cd-4749-9f5e-d9da5bca9286 --pipeline gd5d56ac-1rb9-4181-8fbd-b6579ccb8fc1

/api/mq/pipelines

Returns a json object with information about all MaxQuant pipelines in a certain project.

Example:

curl -X POST --data project=lsarp  https://proteomics.resistancedb.org/api/mq/pipelines

>>>
[{"slug": "staphylococcus-aureus-tmt11", "name": "Staphylococcus aureus (TMT11)", "path_as_str": "/datalake/P/P1/P1MQ1"}]

/api/mq/qc-data

Example:

curl -X POST --data project=lsarp --data pipeline=sa-tmt11 https://proteomics.resistancedb.org/api/mq/qc-data


{"RawFile": ["SA021_210531_C", "SA021_210531_D", "SA021_210531_E", "SA021_210531_F", "SA021_210531_H"], "Index": [1.0, 2.0, 3.0, 4.0, 5.0], "DateAcquired": [1622476527000000000, 1622483222000000000, 1622492621000000000, 1622499315000000000, 1622512688000000000], "Instrument": ["Orbitrap Fusion Lumos", "Orbitrap Fusion Lumos", "Orbitrap Fusion Lumos", "Orbitrap Fusion Lumos", "Orbitrap Fusion Lumos"], "ExperimentMsOrder": ["Ms2", "Ms2", "Ms2", "Ms2", "Ms2"], "TotalAnalysisTime(min)": [99.9253922346667, 99.9313123146833, 99.9273881533167, 99.926844868, 99.9257958661333], "TotalScans": [43032, 42644, 42711, 42369, 42833], "NumMs1Scans": [5996, 6173, 6133, 6355, 6043], "NumMs2Scans": [37036, 36471, 36578, 36014, 36790], "NumMs3Scans": [0, 0, 0, 0, 0], "Ms1ScanRate(/s)": [1.00007947027767, 1.02954050087278, 1.02290942008649, 1.05994206868614, 1.00791458095158], "Ms2ScanRate(/s)": [6.17727539379646, 6.08267805075833, 6.10076321016201, 6.00672756281079, 6.13621999556653], "Ms3ScanRate(/s)": [0, 0, 0, 0, 0], "MeanDutyCycle(s)": [0.951965903999792, 0.949594528000013, 0.94862161599977, 0.947536128000124, 0.950974272000025], "MeanMs2TriggerRate(/Ms1Scan)": [6.17678452301534, 5.90814838814191, 5.96412848524376, 5.66703383162864, 6.08803574383584], "Ms1MedianSummedIntensity": [1373091496.7832, 1174184979.02734, 1279266962.39844, 1161303464.01563, 1282214517.42188], "Ms2MedianSummedIntensity": [1633995.80926514, 1355357.38024902, 1461732.65924072, 1285265.38223267, 1572994.36050415], "MedianPrecursorIntensity": [572243.96875, 482155.71875, 521451.96875, 445561.140625, 521398.25], "MedianMs1IsolationInterence": [0.267313288607806, 0.264238075086116, 0.26554694172683, 0.259529487636828, 0.262508095447206], "MedianMs2PeakFractionConsumingTop80PercentTotalIntensity": [0.354166666666667, 0.364238410596026, 0.36, 0.363636363636364, 0.356006893386657], "NumEsiInstabilityFlags": [1, 3, 0, 12, 4], "MedianMs1FillTime(ms)": [1.27314174175262, 1.48821616172791, 1.39801180362701, 1.55530488491058, 1.34955477714539], "MedianMs2FillTime(ms)": [86, 86, 86, 86, 86], "MedianMs3FillTime(ms)": [NaN, NaN, NaN, NaN, NaN], "MedianPeakWidthAt10%H(s)": [28.8155269614892, 29.3934068747652, 29.6827481566525, 30.4683510280734, 30.0636003825315], "MedianPeakWidthAt50%H(s)": [11.5410179871052, 11.6453049168208, 11.7461342388454, 11.8654403906942, 11.9581356904507], "MedianAsymmetryAt10%H": [1.09751979427411, 1.10183101679795, 1.09483975707686, 1.09099972704928, 1.09248235122764], "MedianAsymmetryAt50%H": [1.03279572756282, 1.04327639108573, 1.0352354303321, 1.03152921372008, 1.03189153541257], "MeanCyclesPerAveragePeak": [30.2694947796108, 30.9536396936407, 31.2903982536486, 32.1553449285148, 31.6134739579271], "PeakCapacity": [519.856808750705, 515.231833432065, 510.789046637421, 505.650368184351, 501.725438255992], "TimeBeforeFirstExceedanceOf10%MaxIntensity": [11.2920304712, 11.0928231656, 10.8445925642667, 10.94502254, 10.72725291625], "TimeAfterLastExceedanceOf10%MaxIntensity": [5.25216392423333, 5.26415371870002, 5.22221408105, 5.22979773493333, 5.23404510213335], "FractionOfRunAbove10%MaxIntensity": [0.834549143222103, 0.836431098158571, 0.839324531675301, 0.838245443052445, 0.840379061914724], "RawFilePath": ["/datalake/P/P36/P36MQ36/inputs/SA021_210531_C", "/datalake/P/P36/P36MQ36/inputs/SA021_210531_D", "/datalake/P/P36/P36MQ36/inputs/SA021_210531_E", "/datalake/P/P36/P36MQ36/inputs/SA021_210531_F", "/datalake/P/P36/P36MQ36/inputs/SA021_210531_H"], "Date": ["2021-05-31", "2021-05-31", "2021-05-31", "2021-05-31", "2021-06-01"], "Day": ["2021-151", "2021-151", "2021-151", "2021-151", "2021-152"], "Week": ["2021-22", "2021-22", "2021-22", "2021-22", "2021-22"], "Month": ["2021-5", "2021-5", "2021-5", "2021-5", "2021-6"], "Year": ["2021", "2021", "2021", "2021", "2021"], "LRG_omics version": [NaN, NaN, NaN, NaN, NaN], "Pipeline": [NaN, NaN, NaN, NaN, NaN], "FastaFile": [NaN, NaN, NaN, NaN, NaN], "MaxQuantPar": [NaN, NaN, NaN, NaN, NaN], "MS": [5996.0, 6173.0, 6133.0, 6355.0, 6043.0], "MS/MS": [37036.0, 36471.0, 36578.0, 36014.0, 36790.0], "MS3": [0.0, 0.0, 0.0, 0.0, 0.0], "MS/MS Submitted": [43432.0, 42954.0, 42987.0, 42425.0, 43084.0], "MS/MS Identified": [125.0, 89.0, 78.0, 123.0, 163.0], "MS/MS Identified [%]": [0.29, 0.21, 0.18, 0.29, 0.38], "Peptide Sequences Identified": [87.0, 60.0, 50.0, 78.0, 86.0], "Av. Absolute Mass Deviation [mDa]": [157970.0, 143820.0, 147220.0, 149600.0, 136680.0], "Mass Standard Deviation [mDa]": [168260.0, 151340.0, 156740.0, 158360.0, 146430.0], "N_protein_groups": [49, 37, 27, 33, 31], "N_protein_true_hits": [3, 3, 3, 3, 3], "N_protein_potential_contaminants": [46, 34, 24, 30, 28], "N_protein_reverse_seq": [0, 0, 0, 0, 0], "Protein_mean_seq_cov [%]": [68.06666666666666, 68.06666666666666, 68.06666666666666, 68.06666666666666, 68.06666666666666], "TMT1_missing_values": [0, 0, 0, 1, 1], "TMT2_missing_values": [0, 0, 0, 1, 1], "TMT3_missing_values": [0, 0, 0, 1, 1], "TMT4_missing_values": [0, 0, 0, 1, 1], "TMT5_missing_values": [0, 0, 0, 1, 1], "TMT6_missing_values": [0, 0, 0, 1, 1], "TMT7_missing_values": [0, 0, 0, 1, 1], "TMT8_missing_values": [0, 0, 0, 1, 1], "TMT9_missing_values": [0, 0, 0, 1, 1], "TMT10_missing_values": [0, 0, 0, 1, 1], "TMT11_missing_values": [0, 0, 0, 1, 1], "N_peptides": [87.0, 60.0, 50.0, 78.0, 86.0], "N_peptides_potential_contaminants": [84.0, 57.0, 47.0, 75.0, 83.0], "N_peptides_reverse": [0.0, 0.0, 0.0, 0.0, 0.0], "Oxidations [%]": [5.75, 3.33, 4.0, 2.56, 3.49], "N_missed_cleavages_total": [34.0, 21.0, 12.0, 30.0, 31.0], "N_missed_cleavages_eq_0 [%]": [60.92, 65.0, 76.0, 61.54, 63.95], "N_missed_cleavages_eq_1 [%]": [29.89, 31.67, 18.0, 19.23, 30.23], "N_missed_cleavages_eq_2 [%]": [9.2, 3.33, 6.0, 19.23, 5.81], "N_missed_cleavages_gt_3 [%]": [0.0, 0.0, 0.0, 0.0, 0.0], "N_peptides_last_amino_acid_K [%]": [68.97, 66.67, 66.0, 61.54, 53.49], "N_peptides_last_amino_acid_R [%]": [29.89, 31.67, 32.0, 37.18, 44.19], "N_peptides_last_amino_acid_other [%]": [1.15, 1.67, 2.0, 1.28, 2.33], "Mean_parent_int_frac": [0.76, 0.76, 0.76, 0.76, 0.76], "Uncalibrated - Calibrated m/z [ppm] (ave)": [2.7415011627906978, 2.576863793103448, 2.690334090909091, 2.646644943820225, 2.898638775510204], "Uncalibrated - Calibrated m/z [ppm] (sd)": [0.4648552158928993, 0.5576167642368961, 0.3183931831322439, 0.9044888200638536, 0.4135656221237233], "Uncalibrated - Calibrated m/z [Da] (ave)": [0.001353795116279, 0.0012787048275862, 0.0014107493181818, 0.0011941075280898, 0.0015648651020408], "Uncalibrated - Calibrated m/z [Da] (sd)": [0.0003500341425564, 0.0004812526933493, 0.0004056083979731, 0.0004082370373463, 0.0003700619876708], "Peak Width(ave)": [0.8557468807339449, 0.8981167901234568, 0.9357113846153846, 0.8475711428571429, 0.8682191071428571], "Peak Width (std)": [0.3173496083683649, 0.3055485354338097, 0.2629870508358037, 0.2870181767441759, 0.3747969534331546], "qc1_peptide_charges": ["[2]", "[2, 3]", "[2]", "[2, 3]", "[2, 3]"], "N_qc1_missing_values": ["[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]"], "reporter_intensity_corrected_qc1_ave": [118403.54545454546, 336068.1818181818, 121905.0, 216885.45454545456, 321740.9090909091], "reporter_intensity_corrected_qc1_sd": [15546.72921674662, 33090.07014421034, 23883.441677522867, 25961.51255000944, 60109.87386059956], "reporter_intensity_corrected_qc1_cv": [13.13029027725773, 9.846237143066578, 19.591847485765857, 11.970149222048663, 18.682695349634663], "calibrated_retention_time_qc1": [28.592, 28.832, 28.492, 28.89, 28.856], "retention_length_qc1": [0.67593, 0.8974, 0.80298, 1.0287, 0.97924], "N_of_scans_qc1": [35.0, 44.0, 44.0, 57.0, 42.0], "qc2_peptide_charges": ["[3]", "[3]", "[3]", "[3]", "[3]"], "N_qc2_missing_values": ["[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]"], "reporter_intensity_corrected_qc2_ave": [10655.045454545456, 10466.681818181818, 9551.090909090908, 7102.845454545453, 10960.081818181818], "reporter_intensity_corrected_qc2_sd": [1899.459126537981, 1617.258841271063, 2520.185209808108, 1322.017686144682, 1245.894167997924], "reporter_intensity_corrected_qc2_cv": [17.826851463385072, 15.451495224223786, 26.386359776026712, 18.612508108263278, 11.36756265752592], "calibrated_retention_time_qc2": [65.516, 65.615, 65.91, 66.219, 65.817], "retention_length_qc2": [0.6997, 0.64079, 0.6447, 0.75824, 0.74315], "N_of_scans_qc2": [33.0, 28.0, 33.0, 36.0, 34.0], "N_of_Protein_qc_pepts": ["['11;11']", "['15;15;3']", "['12;12;2']", "['14;14']", "['14;14']"], "N_Protein_qc_missing_values": ["[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]", "[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]"], "reporter_intensity_corrected_Protein_qc_ave": [2147163.636363636, 2617475.4545454546, 2348207.272727273, 2407727.272727273, 2548828.1818181816], "reporter_intensity_corrected_Protein_qc_sd": [628648.0215838767, 846443.44322007, 762162.9915049896, 705718.5546286192, 811398.0259327745], "reporter_intensity_corrected_Protein_qc_cv": [29.278067630119413, 32.33816163395739, 32.457228131305136, 29.310568627203367, 31.834159388255497], "Missed Cleavages [%]": [39.08, 35.0, 24.0, 38.46, 36.05], "Flagged": [false, false, false, false, false], "Use Downstream": [true, true, true, true, true]}

A subset of columns can be requested with as follows:

curl ...

/api/mq/protein-names

Example:

curl -X POST -H 'Content-Type: application/json' --data '{"project": "lsarp", "pipeline": "sa-tmt11"}' https:/proteomics.resistancedb.org/api/mq/protein-names

{"protein_names": ["CON__ENSEMBL:ENSBTAP00000038253", "CON__Q05B55", "CON__Q7Z3Y8", "CON__Q7Z3Y9", "CON__Q2YDI2", "CON__ENSEMBL:ENSBTAP00000016285", "CON__ENSEMBL:ENSBTAP00000007350;CON__P01030", "CON__Q03247", "CON__P01966", "CON__H-INV:HIT000292931", "CON__Q3KUS7", "CON__Q2HJF0", "CON__A2A5Y0", "CON__P19012", "CON__Q9H552", "CON__Q0V8M9", "CON__P02777", "CON__Q6KB66-1", "CON__P02662", "CON__Q0VCM5", "CON__P05784", "CON__Q148H6", "CON__Q2UVX4", "CON__REFSEQ:XP_932229", "CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229", "CON__P20930", "CON__Q5D862", "CON__Q922U2", "CON__Q1A7A4", "CON__Q28085", "CON__Q3SX28", "CON__ENSEMBL:ENSBTAP00000025008", "CON__P04258", "CON__Q9N2I2", "CON__Streptavidin", "CON__P50448", "CON__Q3ZAW8;CON__P08779;CON__P02533;CON__Q9Z2K1;CON__P08727;CON__P19001;CON__Q7Z3Y9;CON__O76013;CON__Q7Z3Y8;CON__A2A4G1;CON__Q497I4;CON__A2AB72;CON__Q6IFX2;CON__Q7Z3Z0;CON__Q9QWL7;CON__Q04695;CON__Q92764;CON__Q9UE12;CON__Q15323;CON__A2A5Y0;CON__Q14525;CON__REFSEQ:XP_986630", "CON__Q8BGZ7;CON__O95678", "CON__ENSEMBL:ENSBTAP00000016046", "CON__Q2KIF2", "CON__P17697", "CON__Q95121", "CON__H-INV:HIT000292931;CON__P05787", "CON__Q32PJ2", "CON__P02070;CON__Q3SX09", "CON__P08727", "CON__ENSEMBL:ENSBTAP00000001528", "CON__Q28194", "CON__Q3TTY5", "CON__REFSEQ:XP_001252647;CON__A2I7N3", "CON__P00711", "CON__Q3MHN2", "CON__P07744", "CON__Q32MB2", "CON__Q2TBQ1", "CON__Q3ZBS7", "CON__P02676", "CON__Q148H6;CON__Q7Z3Y7", "CON__Q9D312", "CON__Q6NXH9", "CON__Q05443", "CON__Q3T052", "CON__Q9C075", "CON__Q6IFX2", "CON__H-INV:HIT000292931;CON__P05787;CON__Q9H552", "CON__P28800", "CON__Q2KJ62;CON__P01044-1", "CON__P02666", "CON__Q32PI4", "CON__Q95M17", "CON__Q28107", "CON__Q8N1N4-2;CON__Q7RTT2", "CON__Q3SY84", "CON__Q3SX14", "CON__Q3ZBD7", "CON__Q6IFU6", "CON__P50446", "QC2|Peptide2", "CON__P35908v2;CON__P35908", "CON__Q9R0H5;CON__Q14CN4-1;CON__Q6IME9;CON__Q3SY84;CON__Q6NXH9", "CON__P50446;CON__P48668;CON__P04259;CON__P02538", "CON__Q6IME9;CON__Q6NXH9", "CON__O43790;CON__Q6NT21;CON__P78385;CON__Q14533", "CON__P02672", "CON__P19013;CON__P07744", "CON__P35527", "CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462", "CON__ENSEMBL:ENSBTAP00000032840", "823|Adapter_protein_MecA_1|100.0%", "CON__P02768-1", "CON__P13645", "CON__P02535-1;CON__P13645", "CON__P13645;CON__P02535-1", "CON__P0C1U8", "QC1|Peptide1", "CON__P04264", "CON__ENSEMBL:ENSBTAP00000038253;CON__P04264", "CON__P04264;CON__ENSEMBL:ENSBTAP00000038253", "CON__P15636", "QC3|BSA;CON__P02769", "CON__P02769;QC3|BSA"], "Score": [-2.0, -0.00035682, -0.00015709, 0.0004502, 0.0028997, 0.005782, 0.0086608, 0.018453, 0.019632, 0.031172, 0.03314, 0.046157, 0.12325, 0.14458, 0.17288, 0.25441, 0.30094, 0.59944, 2.6436, 2.8874465, 2.9975735, 3.00492895, 3.185175, 3.2554, 3.44062, 3.971716666666667, 4.001147896666667, 4.0085880000000005, 4.3311, 4.4275805, 4.5179325, 4.9009, 5.710233333333334, 5.7197000000000005, 5.7626, 5.7626, 5.763, 5.7638, 5.7649, 5.7687, 5.7785, 5.7842, 5.7953, 5.8015, 5.8088, 5.8106, 5.8204095, 5.8263, 5.8278, 5.8287, 5.8348, 5.8358, 5.8404, 5.8412, 5.8507, 5.85985, 5.86625, 5.869, 5.8716, 5.8869, 5.888, 5.9492, 5.9554, 5.9554, 5.9554, 5.9554, 5.9619, 5.9619, 6.0408, 6.0565, 6.0921, 6.0939499999999995, 6.1446, 6.1618, 6.1975, 6.5082, 7.5403, 8.193838, 9.253181750000001, 11.529, 11.74, 11.991, 12.225, 12.7810075, 14.165, 22.374, 23.05566, 23.7471, 28.115699999999997, 48.947333333333326, 71.044, 114.85, 122.03105, 266.104, 270.058, 305.36999999999995, 323.31, 323.31, 323.31, 323.31, 323.31], "Intensity": [8409900.0, 11054000.0, 0.0, 0.0, 6152600.0, 45442000.0, 252630000.0, 821110000.0, 7537300.0, 0.0, 3730600.0, 46085000.0, 3750700.0, 26828000.0, 24939000.0, 7565600.0, 0.0, 23059000.0, 0.0, 25551700.0, 114805000.0, 53888500.0, 35133000.0, 3966400.0, 47051000.0, 95932400.0, 22793666.666666668, 0.0, 15673750.0, 17165500.0, 41640500.0, 64577666.666666664, 79765666.66666667, 249340000.0, 14302000.0, 12215000.0, 42996000.0, 3811400.0, 25339000.0, 0.0, 84044000.0, 0.0, 126100000.0, 11582000.0, 12202000.0, 25058000.0, 197860500.0, 0.0, 0.0, 909560000.0, 45582000.0, 0.0, 0.0, 74963000.0, 39938000.0, 28655500.0, 0.0, 12411000.0, 690640000.0, 0.0, 15069000.0, 2750966.6666666665, 6625600.0, 10556000.0, 200210000.0, 32296000.0, 0.0, 0.0, 0.0, 3608400.0, 784210000.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 13143400.0, 21867650.0, 8087300.0, 195500000.0, 0.0, 12589000.0, 32299750.0, 0.0, 524486900.0, 84901200.0, 0.0, 3372080.0, 132846000.0, 1957750.0, 14506000.0, 51801000.0, 458806000.0, 98255000.0, 140660666.66666666, 15708000.0, 20379000.0, 3445960000.0, 3721633333.3333335, 3967550000.0]}

/api/mq/protein-groups

Example:

curl -H 'Content-Type: application/json' --data '{"project": "lsarp", "pipeline": "sa-tmt11", "columns": ["Reporter intensity corrected"], "protein_names": ["QC1|Peptide1"]}'  https://proteomics.resistancedb.org/api/mq/protein-groups

"{\"RawFile\":{\"0\":\"SA021_210531_C.raw\",\"1\":\"SA021_210531_D.raw\",\"2\":\"SA021_210531_E.raw\",\"3\":\"SA021_210531_F.raw\",\"4\":\"SA021_210531_H.raw\"},\"Majority protein IDs\":{\"0\":\"QC1|Peptide1\",\"1\":\"QC1|Peptide1\",\"2\":\"QC1|Peptide1\",\"3\":\"QC1|Peptide1\",\"4\":\"QC1|Peptide1\"},\"Reporter intensity corrected 1\":{\"0\":93489.0,\"1\":351390.0,\"2\":103270.0,\"3\":216110.0,\"4\":228090.0},\"Reporter intensity corrected 2\":{\"0\":131730.0,\"1\":434210.0,\"2\":103280.0,\"3\":301800.0,\"4\":378080.0},\"Reporter intensity corrected 3\":{\"0\":103320.0,\"1\":447160.0,\"2\":125940.0,\"3\":314060.0,\"4\":429110.0},\"Reporter intensity corrected 4\":{\"0\":123840.0,\"1\":428800.0,\"2\":132820.0,\"3\":326520.0,\"4\":374890.0},\"Reporter intensity corrected 5\":{\"0\":140250.0,\"1\":508560.0,\"2\":189750.0,\"3\":303540.0,\"4\":480840.0},\"Reporter intensity corrected 6\":{\"0\":137110.0,\"1\":416800.0,\"2\":123850.0,\"3\":372190.0,\"4\":516980.0},\"Reporter intensity corrected 7\":{\"0\":128280.0,\"1\":405080.0,\"2\":117990.0,\"3\":317570.0,\"4\":415010.0},\"Reporter intensity corrected 8\":{\"0\":129650.0,\"1\":465560.0,\"2\":112340.0,\"3\":333770.0,\"4\":471380.0},\"Reporter intensity corrected 9\":{\"0\":105690.0,\"1\":387750.0,\"2\":123200.0,\"3\":280420.0,\"4\":426380.0},\"Reporter intensity corrected 10\":{\"0\":106280.0,\"1\":355900.0,\"2\":96945.0,\"3\":287530.0,\"4\":425780.0},\"Reporter intensity corrected 11\":{\"0\":102800.0,\"1\":420890.0,\"2\":111570.0,\"3\":290750.0,\"4\":361690.0}}"

/api/mq/download

(not implemented)

Example:

url -H 'Content-Type: application/json' --data '{"project": "lsarp", "pipeline": "sa-tmt11", "filename": "proteinGroups.txt"